167 files changed, 466 insertions, 587 deletions
diff --git a/.gitignore b/.gitignore
index c79ea467..32789e7c 100644
--- a/.gitignore
+++ b/.gitignore
@@ -45,8 +45,8 @@
 /daemon/lua/trust_anchors.lua
 /depcomp
 /distro/tests/*/.vagrant
-/doc/.doctrees
-/doc/doxyxml
+/doc/**/.doctrees
+/doc/**/doxyxml
 /doc/html
 /doc/kresd.8
 /doc/texinfo
diff --git a/doc/_static/css/dev.css b/doc/_static/css/dev.css
new file mode 100644
index 00000000..c71d8ad2
--- /dev/null
+++ b/doc/_static/css/dev.css
@@ -0,0 +1,38 @@
+/* SPDX-License-Identifier: GPL-3.0-or-later */
+
+.wy-side-nav-search {
+    background-color: #b92929; /* From logo manual */
+}
+.wy-side-nav-search input[type=text] {
+    border-color: #a42424;
+}
+.wy-side-nav-search div.version {
+    color: hsla(0,0%,100%,0.4);
+}
+.wy-nav-top {
+    background-color: #b92929;
+}
+
+a {
+    color: #b92929;
+}
+a:hover {
+    color: #d13030;
+}
+a:visited {
+    color: #780001;
+}
+a:visited:hover {
+    color: #d13030;
+}
+
+.wy-menu-vertical p.caption {
+    color: #d95555;
+}
+
+.wy-menu-vertical a, .wy-menu-vertical a:hover, .wy-menu-vertical a:visited,
+.wy-menu-vertical a:visited:hover {
+    /* This is here so that the a-rules above do not override the menu colors,
+     * which should remain grey */
+    color: #d9d9d9;
+}
diff --git a/doc/_static/css/user.css b/doc/_static/css/user.css
new file mode 100644
index 00000000..6b3b9c97
--- /dev/null
+++ b/doc/_static/css/user.css
@@ -0,0 +1,38 @@
+/* SPDX-License-Identifier: GPL-3.0-or-later */
+
+.wy-side-nav-search {
+    background-color: #00a2e2; /* From logo manual */
+}
+.wy-side-nav-search input[type=text] {
+    border-color: #45bfff;
+}
+.wy-side-nav-search div.version {
+    color: hsla(0,0%,100%,0.4);
+}
+.wy-nav-top {
+    background-color: #00a2e2;
+}
+
+a {
+    color: #00619c;
+}
+a:hover {
+    color: #00a2e2;
+}
+a:visited {
+    color: #00619c;
+}
+a:visited:hover {
+    color: #00a2e2;
+}
+
+.wy-menu-vertical p.caption {
+    color: #00a2e2;
+}
+
+.wy-menu-vertical a, .wy-menu-vertical a:hover, .wy-menu-vertical a:visited,
+.wy-menu-vertical a:visited:hover {
+    /* This is here so that the a-rules above do not override the menu colors,
+     * which should remain grey */
+    color: #d9d9d9;
+}
diff --git a/doc/_static/logo-negativ-dev.svg b/doc/_static/logo-negativ-dev.svg
new file mode 100644
index 00000000..5bd4b771
--- /dev/null
+++ b/doc/_static/logo-negativ-dev.svg
@@ -0,0 +1,36 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<svg
+   width="160.080002pt"
+   height="59.039997pt"
+   viewBox="0 0 160.080002 59.039997"
+   version="1.1"
+   id="svg13"
+   xmlns="http://www.w3.org/2000/svg"
+   xmlns:svg="http://www.w3.org/2000/svg">
+  <defs
+     id="defs5">
+    <clipPath
+       id="clip-0">
+      <path
+         clip-rule="nonzero"
+         d="M 4.507813 0 L 154.742188 0 L 154.742188 40.5625 L 4.507813 40.5625 Z M 4.507813 0 "
+         id="path2" />
+    </clipPath>
+  </defs>
+  <g
+     clip-path="url(#clip-0)"
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+       fill-opacity="1"
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+     id="path11" />
+</svg>
diff --git a/doc/config-dnssec-glue.rst b/doc/config-dnssec-glue.rst
deleted file mode 100644
index 9728cfbc..00000000
--- a/doc/config-dnssec-glue.rst
+++ /dev/null
@@ -1,25 +0,0 @@
-.. SPDX-License-Identifier: GPL-3.0-or-later
-
-.. option:: options/glue-checking: normal|strict|permissive
-
-   :default: normal
-
-   The resolver strictness checking level.
-
-   By default, resolver runs in *normal* mode. There are possibly many small adjustments
-   hidden behind the mode settings, but the main idea is that in *permissive* mode, the resolver
-   tries to resolve a name with as few lookups as possible, while in *strict* mode it spends much
-   more effort resolving and checking referral path. However, if majority of the traffic is covered
-   by DNSSEC, some of the strict checking actions are counter-productive.
-
-   .. csv-table::
-    :header: "Glue type", "Modes when it is accepted",   "Example glue [#example_glue]_"
-
-    "mandatory glue",     "strict, normal, permissive",  "ns1.example.org"
-    "in-bailiwick glue",  "normal, permissive",          "ns1.example2.org"
-    "any glue records",   "permissive",                  "ns1.example3.net"
-
-   .. [#example_glue] The examples show glue records acceptable from servers
-        authoritative for `org` zone when delegating to `example.org` zone.
-        Unacceptable or missing glue records trigger resolution of names listed
-        in NS records before following respective delegation.
diff --git a/doc/config-dnssec.rst b/doc/config-dnssec.rst
deleted file mode 100644
index 3f9e3ad9..00000000
--- a/doc/config-dnssec.rst
+++ /dev/null
@@ -1,17 +0,0 @@
-.. SPDX-License-Identifier: GPL-3.0-or-later
-
-.. _config-dnssec:
-
-*************************
-DNSSEC, data verification
-*************************
-
-Good news! Knot Resolver uses secure configuration by default, and this configuration
-should not be changed unless absolutely necessary, so feel free to skip over this section.
-
-.. include:: config-dnssec-ta.rst
-
-DNSSEC is main technology to protect data, but it is also possible to change how strictly
-resolver checks data from insecure DNS zones:
-
-.. include:: config-dnssec-glue.rst
diff --git a/doc/config-logging-header.rst b/doc/config-logging-header.rst
deleted file mode 100644
index 551b1bec..00000000
--- a/doc/config-logging-header.rst
+++ /dev/null
@@ -1,9 +0,0 @@
-.. SPDX-License-Identifier: GPL-3.0-or-later
-
-Logging API
-===========
-
-.. _config_log_groups:
-
-.. doxygenfile:: lib/log.h
-    :project: libkres
diff --git a/doc/config-network-forwarding.rst b/doc/config-network-forwarding.rst
deleted file mode 100644
index f8b1ab70..00000000
--- a/doc/config-network-forwarding.rst
+++ /dev/null
@@ -1,43 +0,0 @@
-.. SPDX-License-Identifier: GPL-3.0-or-later
-
-Forwarding
-----------
-
-*Forwarding* configuration instructs resolver to forward cache-miss queries from clients to manually specified DNS resolvers *(upstream servers)*.
-In other words the *forwarding* mode does exact opposite of the default *recursive* mode because resolver in *recursive* mode automatically selects which servers to ask.
-
-Main use-cases are:
-
-  * Building a tree structure of DNS resolvers to improve performance (by improving cache hit rate).
-  * Accessing domains which are not available using recursion (e.g. if internal company servers return different answers than public ones).
-  * Forwarding through a central DNS traffic filter.
-
-Forwarding implementation in Knot Resolver has following properties:
-
-  * Answers from *upstream* servers are cached.
-  * Answers from *upstream* servers are locally DNSSEC-validated, unless dnssec is disabled.
-  * Resolver automatically selects which IP address from given set of IP addresses will be used (based on performance characteristics).
-  * :ref:`Forwarding <config-forward>` can use either encrypted or unencrypted DNS protocol.
-
-.. warning::
-
-        We strongly discourage use of "fake top-level domains" like ``corp.`` because these made-up domains are indistinguishable from an attack, so DNSSEC validation will prevent such domains from working.
-        If you *really* need a variant of forwarding which does not DNSSEC-validate received data please see chapter :ref:`dns-graft`.
-        In long-term it is better to migrate data into a legitimate, properly delegated domains which do not suffer from these security problems.
-
-
-Simple examples for **unencrypted** forwarding:
-
-.. code-block:: yaml
-
-   forward:
-     # forward all traffic to specified IP addresses (selected automatically)
-     - subtree: "."
-       servers: [2001:db8::1, 192.0.2.1]
-     # forward only queries for names under domain example.com to a single IP address
-     - subtree: example.com.
-       servers: [192.0.2.1]
-
-To configure encrypted version please see chapter about :ref:`forwarding <config-forward>`.
-
-Forwarding is documented in depth together with rest of :ref:`config-policy-new`.
diff --git a/doc/daemon-bindings-cache.rst b/doc/daemon-bindings-cache.rst
deleted file mode 120000
index d5d3ee7b..00000000
--- a/doc/daemon-bindings-cache.rst
+++ /dev/null
@@ -1 +0,0 @@
-../daemon/bindings/cache.rst
-\ No newline at end of file
diff --git a/doc/daemon-bindings-net_client.rst b/doc/daemon-bindings-net_client.rst
deleted file mode 120000
index c96fc76f..00000000
--- a/doc/daemon-bindings-net_client.rst
+++ /dev/null
@@ -1 +0,0 @@
-../daemon/bindings/net_client.rst
-\ No newline at end of file
diff --git a/doc/daemon-bindings-net_dns_tweaks.rst b/doc/daemon-bindings-net_dns_tweaks.rst
deleted file mode 120000
index ee7e98ac..00000000
--- a/doc/daemon-bindings-net_dns_tweaks.rst
+++ /dev/null
@@ -1 +0,0 @@
-../daemon/bindings/net_dns_tweaks.rst
-\ No newline at end of file
diff --git a/doc/daemon-bindings-net_server.rst b/doc/daemon-bindings-net_server.rst
deleted file mode 120000
index b6cf46ce..00000000
--- a/doc/daemon-bindings-net_server.rst
+++ /dev/null
@@ -1 +0,0 @@
-../daemon/bindings/net_server.rst
-\ No newline at end of file
diff --git a/doc/daemon-bindings-net_tlssrv.rst b/doc/daemon-bindings-net_tlssrv.rst
deleted file mode 120000
index 2e38daa3..00000000
--- a/doc/daemon-bindings-net_tlssrv.rst
+++ /dev/null
@@ -1 +0,0 @@
-../daemon/bindings/net_tlssrv.rst
-\ No newline at end of file
diff --git a/doc/daemon-bindings-net_xdpsrv.rst b/doc/daemon-bindings-net_xdpsrv.rst
deleted file mode 120000
index da7870b2..00000000
--- a/doc/daemon-bindings-net_xdpsrv.rst
+++ /dev/null
@@ -1 +0,0 @@
-../daemon/bindings/net_xdpsrv.rst
-\ No newline at end of file
diff --git a/doc/daemon-bindings-worker.rst b/doc/daemon-bindings-worker.rst
deleted file mode 120000
index 3ea3e616..00000000
--- a/doc/daemon-bindings-worker.rst
+++ /dev/null
@@ -1 +0,0 @@
-../daemon/bindings/worker.rst
-\ No newline at end of file
diff --git a/doc/daemon-scripting.rst b/doc/daemon-scripting.rst
deleted file mode 120000
index 482b759e..00000000
--- a/doc/daemon-scripting.rst
+++ /dev/null
@@ -1 +0,0 @@
-../daemon/scripting.rst
-\ No newline at end of file
diff --git a/doc/Doxyfile b/doc/dev/Doxyfile
index d2f4c5bf..bb88c1ac 100644
--- a/doc/Doxyfile
+++ b/doc/dev/Doxyfile
@@ -6,7 +6,7 @@ GENERATE_LATEX    = NO
 GENERATE_MAN      = NO
 GENERATE_RTF      = NO
 CASE_SENSE_NAMES  = NO
-INPUT             = ../lib ../daemon
+INPUT             = ../../lib ../../daemon
 FILE_PATTERNS     = *.h
 QUIET             = YES
 RECURSIVE         = YES
diff --git a/doc/architecture-gc.rst b/doc/dev/architecture-gc.rst
index b57c857c..b57c857c 100644
--- a/doc/architecture-gc.rst
+++ b/doc/dev/architecture-gc.rst
diff --git a/doc/architecture-kresd.rst b/doc/dev/architecture-kresd.rst
index 783fbb8a..783fbb8a 100644
--- a/doc/architecture-kresd.rst
+++ b/doc/dev/architecture-kresd.rst
diff --git a/doc/architecture-manager.rst b/doc/dev/architecture-manager.rst
index bf663edd..1a0381af 100644
--- a/doc/architecture-manager.rst
+++ b/doc/dev/architecture-manager.rst
@@ -9,7 +9,7 @@ The manager is a component written in Python and a bit of C used for native exte
 
 The manager is mostly modelled around config processing pipeline:
 
-.. image:: architecture-manager.svg
+.. image:: ../architecture-config.svg
     :width: 100%
     :alt: Diagram showing a configuration change request processing pipeline inside of the manager. The request goes first through an API server, then through parsing, validation and normalization steps, then into an actual system manager, which commands supervisord and other system components such as kresd.
 
diff --git a/doc/architecture.rst b/doc/dev/architecture.rst
index dc4dc862..ba281f9d 100644
--- a/doc/architecture.rst
+++ b/doc/dev/architecture.rst
@@ -4,7 +4,7 @@ System architecture
 
 Knot Resolver is split into several components, namely the manager, ``kresd`` and the garbage collector. In addition to these custom components, we also rely on `supervisord <http://supervisord.org/>`_.
 
-.. image:: architecture-schema.svg
+.. image:: architecture-supervisor.svg
     :width: 100%
     :alt: Diagram showing process tree and contol relationship between Knot Resolver components. Supervisord is a parent to all processes, namely manager, kresd instances and gc. Manager on the other hand controls every other component and what it does.
 
diff --git a/doc/build.rst b/doc/dev/build.rst
index 5b3ca624..93242195 100644
--- a/doc/build.rst
+++ b/doc/dev/build.rst
@@ -2,8 +2,9 @@
 
 .. _build:
 
-Building from sources
-=====================
+******************
+Cloning repository
+******************
 
 .. note:: Latest up-to-date packages for various distribution can be obtained
    from web `<https://knot-resolver.cz/download/>`_.
@@ -18,8 +19,9 @@ Beware that some 64-bit systems with LuaJIT 2.1 may be affected by
 
    $ git clone --recursive https://gitlab.nic.cz/knot/knot-resolver.git
 
+******************
 Building with apkg
-------------------
+******************
 
 Knot Resolver uses `apkg tool <https://pkg.labs.nic.cz/pages/apkg/>`_ for upstream packaging.
 It allows build packages localy for supported distributions, which it then installs.
@@ -59,8 +61,9 @@ When ``apkg`` is ready, a package can be built and installed.
 
 After that Knot Resolver should be installed.
 
+*******************
 Building with Meson
--------------------
+*******************
 
 Knot Resolver uses `Meson Build system <https://mesonbuild.com/>`_.
 Shell snippets below should be sufficient for basic usage
@@ -69,7 +72,7 @@ article `Using Meson <https://mesonbuild.com/Quick-guide.html>`_.
 
 
 Dependencies
-~~~~~~~~~~~~
+============
 
 .. note:: This section lists basic requirements. Individual modules
    might have additional build or runtime dependencies.
@@ -158,7 +161,7 @@ here's an overview for several platforms.
 * **Mac OS X** - the dependencies can be obtained from `Homebrew formula <https://formulae.brew.sh/formula/knot-resolver>`_.
 
 Compilation
-~~~~~~~~~~~
+===========
 
 Folowing meson command creates new build directory named ``build_dir``, configures installation path to ``/tmp/kr`` and enables static build (to allow installation to non-standard path).
 You can also configure some :ref:`build-options`, in this case enable ``manager``, which is disabled by default.
@@ -186,7 +189,7 @@ At this point you can execute the newly installed binary using path ``/tmp/kr/sb
 .. _build-options:
 
 Build options
-~~~~~~~~~~~~~
+=============
 
 It's possible to change the compilation with build options. These are useful to
 packagers or developers who wish to customize the daemon behaviour, run
@@ -216,7 +219,7 @@ a build directory:
 .. _build-custom-flags:
 
 Customizing compiler flags
-~~~~~~~~~~~~~~~~~~~~~~~~~~
+--------------------------
 
 If you'd like to use customize the build, see meson's `built-in options
 <https://mesonbuild.com/Builtin-options.html>`_. For hardening, see ``b_pie``.
@@ -230,7 +233,7 @@ command.
 .. _build-html-doc:
 
 Documentation
--------------
+=============
 
 To check for documentation dependencies and allow its installation, use
 ``-Ddoc=enabled``. The documentation doesn't build automatically. Instead,
@@ -242,7 +245,7 @@ target ``doc`` must be called explicitly.
    $ ninja -C build_dir doc
 
 Tarball
--------
+=======
 
 Released tarballs are available from `<https://knot-resolver.cz/download/>`_
 
@@ -261,7 +264,7 @@ It's also possible to make a development snapshot tarball:
 .. _packaging:
 
 Packaging
----------
+=========
 
 Recommended build options for packagers:
 
@@ -276,7 +279,7 @@ Recommended build options for packagers:
 * ``-Dunit_tests=enabled`` to force build of unit tests
 
 Systemd
-~~~~~~~
+-------
 
 It's recommended to use the upstream system unit files. If any customizations
 are required, drop-in files should be used, instead of patching/changing the
@@ -292,7 +295,7 @@ To support enabling services after boot, you must also link ``kresd.target`` to
    ln -s ../kresd.target /usr/lib/systemd/system/multi-user.target.wants/kresd.target
 
 Trust anchors
-~~~~~~~~~~~~~
+-------------
 
 If the target distro has externally managed (read-only) DNSSEC trust anchors
 or root hints use this:
@@ -305,8 +308,9 @@ In case you want to have automatically managed DNSSEC trust anchors instead,
 set ``-Dmanaged_ta=enabled`` and make sure both ``keyfile_default`` file and
 its parent directories are writable by kresd process (after package installation!).
 
+************
 Docker image
-------------
+************
 
 Visit `hub.docker.com/r/cznic/knot-resolver
 <https://hub.docker.com/r/cznic/knot-resolver/>`_ for instructions how to run
@@ -318,7 +322,6 @@ For development, it's possible to build the container directly from your git tre
 
    $ docker build -t knot-resolver .
 
-
 .. _jemalloc: https://jemalloc.net
 .. _libuv: https://github.com/libuv/libuv
 .. _LuaJIT: http://luajit.org/luajit.html
diff --git a/doc/conf.py b/doc/dev/conf.py
index 52db3a72..3960e544 100644
--- a/doc/conf.py
+++ b/doc/dev/conf.py
@@ -16,7 +16,6 @@ if os.environ.get('READTHEDOCS', None) == 'True':
 extensions = [
     'sphinx.ext.todo',
     'sphinx.ext.viewcode',
-    'sphinx_tabs.tabs',
     'breathe',
 ]
 
@@ -36,7 +35,7 @@ master_doc = 'index'
 # General information about the project.
 project = u'Knot Resolver'
 copyright = u'CZ.NIC labs'
-with open('../meson.build') as f:
+with open('../../meson.build') as f:
     for line in f:
         match = re.match(r"\s*version\s*:\s*'([^']+)'.*", line)
         if match is not None:
@@ -57,7 +56,7 @@ primary_domain = 'py'
 # Add any paths that contain custom static files (such as style sheets) here,
 # relative to this directory. They are copied after the builtin static files,
 # so a file named "default.css" will overwrite the builtin "default.css".
-html_static_path = ['_static']
+html_static_path = ['../_static']
 
 # Output file base name for HTML help builder.
 htmlhelp_basename = 'apidoc'
@@ -72,9 +71,11 @@ html_theme_options = {
     'collapse_navigation': False,
     'sticky_navigation': True,
 }
-html_logo = '_static/logo-negativ.svg'
-html_style = 'css/main.css'
-
+html_logo = '../_static/logo-negativ-dev.svg'
+html_css_files = [
+    'css/custom.css',
+    'css/dev.css',
+]
 # -- Options for LaTeX output --------------------------------------------------
 
 # Grouping the document tree into LaTeX files. List of tuples
diff --git a/doc/config-answer-reordering.rst b/doc/dev/config-answer-reordering.rst
index 624e7d4e..624e7d4e 100644
--- a/doc/config-answer-reordering.rst
+++ b/doc/dev/config-answer-reordering.rst
diff --git a/doc/config-lua-dnssec.rst b/doc/dev/config-lua-dnssec.rst
index f20e2b30..7be49630 100644
--- a/doc/config-lua-dnssec.rst
+++ b/doc/dev/config-lua-dnssec.rst
@@ -9,9 +9,9 @@ DNSSEC, data verification
 Good news! Knot Resolver uses secure configuration by default, and this configuration
 should not be changed unless absolutely necessary, so feel free to skip over this section.
 
-.. include:: ../daemon/lua/trust_anchors.rst
+.. include:: ../../daemon/lua/trust_anchors.rst
 
 DNSSEC is main technology to protect data, but it is also possible to change how strictly
 resolver checks data from insecure DNS zones:
 
-.. include:: ../lib/layer/mode.rst
+.. include:: ../../lib/layer/mode.rst
diff --git a/doc/config-lua-experimental.rst b/doc/dev/config-lua-experimental.rst
index f709c1c7..f709c1c7 100644
--- a/doc/config-lua-experimental.rst
+++ b/doc/dev/config-lua-experimental.rst
diff --git a/doc/config-lua-logging-monitoring.rst b/doc/dev/config-lua-logging-monitoring.rst
index 8a2a25b6..8a2a25b6 100644
--- a/doc/config-lua-logging-monitoring.rst
+++ b/doc/dev/config-lua-logging-monitoring.rst
diff --git a/doc/config-lua-network.rst b/doc/dev/config-lua-network.rst
index c96bbf8a..8bd67eef 100644
--- a/doc/config-lua-network.rst
+++ b/doc/dev/config-lua-network.rst
@@ -15,7 +15,7 @@ This picture illustrates different actors involved DNS resolution process,
 supported protocols, and clarifies what we call *server configuration*
 and *client configuration*.
 
-.. image:: server_terminology.svg
+.. image:: ../server_terminology.svg
 
 *Attribution: Icons by Bernar Novalyi from the Noun Project*
 
diff --git a/doc/config-lua-overview.rst b/doc/dev/config-lua-overview.rst
index cd7f9086..c710f90a 100644
--- a/doc/config-lua-overview.rst
+++ b/doc/dev/config-lua-overview.rst
@@ -82,7 +82,7 @@ Following example demonstrates how to interactively list all currently loaded mo
 
 Before we dive into configuring features, let us explain modularization basics.
 
-.. include:: ../daemon/bindings/modules.rst
+.. include:: ../../daemon/bindings/modules.rst
 
 Now you know what configuration file to modify, how to read examples and what modules are so you are ready for a real configuration work!
 
diff --git a/doc/config-lua-performance.rst b/doc/dev/config-lua-performance.rst
index ce7fa16e..ce7fa16e 100644
--- a/doc/config-lua-performance.rst
+++ b/doc/dev/config-lua-performance.rst
diff --git a/doc/config-lua-policy.rst b/doc/dev/config-lua-policy.rst
index 2b34a541..2b34a541 100644
--- a/doc/config-lua-policy.rst
+++ b/doc/dev/config-lua-policy.rst
diff --git a/doc/dev/daemon-bindings-cache.rst b/doc/dev/daemon-bindings-cache.rst
new file mode 120000
index 00000000..99af6dfa
--- /dev/null
+++ b/doc/dev/daemon-bindings-cache.rst
@@ -0,0 +1 @@
+../../daemon/bindings/cache.rst
+\ No newline at end of file
diff --git a/doc/dev/daemon-bindings-net_client.rst b/doc/dev/daemon-bindings-net_client.rst
new file mode 120000
index 00000000..1a4e688c
--- /dev/null
+++ b/doc/dev/daemon-bindings-net_client.rst
@@ -0,0 +1 @@
+../../daemon/bindings/net_client.rst
+\ No newline at end of file
diff --git a/doc/dev/daemon-bindings-net_dns_tweaks.rst b/doc/dev/daemon-bindings-net_dns_tweaks.rst
new file mode 120000
index 00000000..223686e2
--- /dev/null
+++ b/doc/dev/daemon-bindings-net_dns_tweaks.rst
@@ -0,0 +1 @@
+../../daemon/bindings/net_dns_tweaks.rst
+\ No newline at end of file
diff --git a/doc/dev/daemon-bindings-net_server.rst b/doc/dev/daemon-bindings-net_server.rst
new file mode 120000
index 00000000..b8eb0259
--- /dev/null
+++ b/doc/dev/daemon-bindings-net_server.rst
@@ -0,0 +1 @@
+../../daemon/bindings/net_server.rst
+\ No newline at end of file
diff --git a/doc/dev/daemon-bindings-net_tlssrv.rst b/doc/dev/daemon-bindings-net_tlssrv.rst
new file mode 120000
index 00000000..4b2af0f8
--- /dev/null
+++ b/doc/dev/daemon-bindings-net_tlssrv.rst
@@ -0,0 +1 @@
+../../daemon/bindings/net_tlssrv.rst
+\ No newline at end of file
diff --git a/doc/dev/daemon-bindings-net_xdpsrv.rst b/doc/dev/daemon-bindings-net_xdpsrv.rst
new file mode 120000
index 00000000..e92e0cac
--- /dev/null
+++ b/doc/dev/daemon-bindings-net_xdpsrv.rst
@@ -0,0 +1 @@
+../../daemon/bindings/net_xdpsrv.rst
+\ No newline at end of file
diff --git a/doc/dev/daemon-bindings-worker.rst b/doc/dev/daemon-bindings-worker.rst
new file mode 120000
index 00000000..f54f2da0
--- /dev/null
+++ b/doc/dev/daemon-bindings-worker.rst
@@ -0,0 +1 @@
+../../daemon/bindings/worker.rst
+\ No newline at end of file
diff --git a/doc/dev/daemon-scripting.rst b/doc/dev/daemon-scripting.rst
new file mode 120000
index 00000000..c8ba7ea5
--- /dev/null
+++ b/doc/dev/daemon-scripting.rst
@@ -0,0 +1 @@
+../../daemon/scripting.rst
+\ No newline at end of file
diff --git a/doc/flowcharts/io_and_worker.dia b/doc/dev/flowcharts/io_and_worker.dia
index 8c5a7555..8c5a7555 100644
--- a/doc/flowcharts/io_and_worker.dia
+++ b/doc/dev/flowcharts/io_and_worker.dia
diff --git a/doc/flowcharts/task_ERD.dia b/doc/dev/flowcharts/task_ERD.dia
index 2bc065b8..2bc065b8 100644
--- a/doc/flowcharts/task_ERD.dia
+++ b/doc/dev/flowcharts/task_ERD.dia
diff --git a/doc/flowcharts/tcp_task.dia b/doc/dev/flowcharts/tcp_task.dia
index 6ad58f3a..6ad58f3a 100644
--- a/doc/flowcharts/tcp_task.dia
+++ b/doc/dev/flowcharts/tcp_task.dia
diff --git a/doc/flowcharts/udp_task.dia b/doc/dev/flowcharts/udp_task.dia
index 6fb86284..6fb86284 100644
--- a/doc/flowcharts/udp_task.dia
+++ b/doc/dev/flowcharts/udp_task.dia
diff --git a/doc/dev/index.rst b/doc/dev/index.rst
new file mode 100644
index 00000000..d8e89aae
--- /dev/null
+++ b/doc/dev/index.rst
@@ -0,0 +1,53 @@
+.. SPDX-License-Identifier: GPL-3.0-or-later
+
+#############
+Knot Resolver
+#############
+
+Welcome to Knot Resolver's documentation for developers and advanced users!
+
+.. toctree::
+   :caption: Building for sources
+   :name: build-chapter
+   :maxdepth: 1
+
+   build   
+
+.. toctree::
+   :caption: Lua configuration
+   :name: configuration-lua-chapter
+   :maxdepth: 1
+
+   config-lua-overview
+   config-lua-network
+   config-lua-performance
+   config-lua-policy
+   config-lua-logging-monitoring
+   config-lua-dnssec
+   config-lua-experimental
+   modules-http-custom-services
+
+.. toctree::
+   :caption: Modules and worker API, Lib
+   :name: configuration-lua-chapter
+   :maxdepth: 1
+
+   lib
+   modules_api
+   worker_api
+
+.. toctree::
+   :caption: Architecture
+   :name: architecture-chapter
+   :maxdepth: 1
+
+   manager-dev
+   architecture
+
+Indices and tables
+==================
+
+* :ref:`genindex`
+* :ref:`modindex`
+* :ref:`search`
+
diff --git a/doc/lib.rst b/doc/dev/lib.rst
index 096afb64..2378f566 100644
--- a/doc/lib.rst
+++ b/doc/dev/lib.rst
@@ -2,7 +2,7 @@
 
 .. _lib_index:
 
-.. include:: ../lib/README.rst
+.. include:: ../../lib/README.rst
 
 API reference
 =============
diff --git a/doc/manager-dev.rst b/doc/dev/manager-dev.rst
index cdf65267..cdf65267 100644
--- a/doc/manager-dev.rst
+++ b/doc/dev/manager-dev.rst
diff --git a/doc/dev/modules-bogus_log.rst b/doc/dev/modules-bogus_log.rst
new file mode 120000
index 00000000..6d98f43f
--- /dev/null
+++ b/doc/dev/modules-bogus_log.rst
@@ -0,0 +1 @@
+../../modules/bogus_log/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-daf.rst b/doc/dev/modules-daf.rst
new file mode 120000
index 00000000..d91d699b
--- /dev/null
+++ b/doc/dev/modules-daf.rst
@@ -0,0 +1 @@
+../../modules/daf/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-detect_time_jump.rst b/doc/dev/modules-detect_time_jump.rst
new file mode 120000
index 00000000..8b4150ff
--- /dev/null
+++ b/doc/dev/modules-detect_time_jump.rst
@@ -0,0 +1 @@
+../../modules/detect_time_jump/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-detect_time_skew.rst b/doc/dev/modules-detect_time_skew.rst
new file mode 120000
index 00000000..67f7bf54
--- /dev/null
+++ b/doc/dev/modules-detect_time_skew.rst
@@ -0,0 +1 @@
+../../modules/detect_time_skew/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-dns64.rst b/doc/dev/modules-dns64.rst
new file mode 120000
index 00000000..374a1b95
--- /dev/null
+++ b/doc/dev/modules-dns64.rst
@@ -0,0 +1 @@
+../../modules/dns64/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-dnstap.rst b/doc/dev/modules-dnstap.rst
new file mode 120000
index 00000000..a284f204
--- /dev/null
+++ b/doc/dev/modules-dnstap.rst
@@ -0,0 +1 @@
+../../modules/dnstap/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-edns_keepalive.rst b/doc/dev/modules-edns_keepalive.rst
new file mode 120000
index 00000000..91307a4f
--- /dev/null
+++ b/doc/dev/modules-edns_keepalive.rst
@@ -0,0 +1 @@
+../../modules/edns_keepalive/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-experimental_dot_auth.rst b/doc/dev/modules-experimental_dot_auth.rst
new file mode 120000
index 00000000..677cb1e6
--- /dev/null
+++ b/doc/dev/modules-experimental_dot_auth.rst
@@ -0,0 +1 @@
+../../modules/experimental_dot_auth/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-hints.rst b/doc/dev/modules-hints.rst
new file mode 120000
index 00000000..a67befde
--- /dev/null
+++ b/doc/dev/modules-hints.rst
@@ -0,0 +1 @@
+../../modules/hints/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-http-custom-services.rst b/doc/dev/modules-http-custom-services.rst
new file mode 120000
index 00000000..223b22d4
--- /dev/null
+++ b/doc/dev/modules-http-custom-services.rst
@@ -0,0 +1 @@
+../../modules/http/custom_services.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-http-trace.rst b/doc/dev/modules-http-trace.rst
new file mode 120000
index 00000000..1c4f666c
--- /dev/null
+++ b/doc/dev/modules-http-trace.rst
@@ -0,0 +1 @@
+../../modules/http/trace.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-http.rst b/doc/dev/modules-http.rst
new file mode 120000
index 00000000..9713c5e7
--- /dev/null
+++ b/doc/dev/modules-http.rst
@@ -0,0 +1 @@
+../../modules/http/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-nsid.rst b/doc/dev/modules-nsid.rst
new file mode 120000
index 00000000..349fabd1
--- /dev/null
+++ b/doc/dev/modules-nsid.rst
@@ -0,0 +1 @@
+../../modules/nsid/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-policy.rst b/doc/dev/modules-policy.rst
new file mode 120000
index 00000000..5a9a1edb
--- /dev/null
+++ b/doc/dev/modules-policy.rst
@@ -0,0 +1 @@
+../../modules/policy/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-predict.rst b/doc/dev/modules-predict.rst
new file mode 120000
index 00000000..f60ef143
--- /dev/null
+++ b/doc/dev/modules-predict.rst
@@ -0,0 +1 @@
+../../modules/predict/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-prefill.rst b/doc/dev/modules-prefill.rst
new file mode 120000
index 00000000..33cac078
--- /dev/null
+++ b/doc/dev/modules-prefill.rst
@@ -0,0 +1 @@
+../../modules/prefill/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-priming.rst b/doc/dev/modules-priming.rst
new file mode 120000
index 00000000..738f810e
--- /dev/null
+++ b/doc/dev/modules-priming.rst
@@ -0,0 +1 @@
+../../modules/priming/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-rebinding.rst b/doc/dev/modules-rebinding.rst
new file mode 120000
index 00000000..f8b05dad
--- /dev/null
+++ b/doc/dev/modules-rebinding.rst
@@ -0,0 +1 @@
+../../modules/rebinding/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-refuse_nord.rst b/doc/dev/modules-refuse_nord.rst
new file mode 120000
index 00000000..4713ba5c
--- /dev/null
+++ b/doc/dev/modules-refuse_nord.rst
@@ -0,0 +1 @@
+../../modules/refuse_nord/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-renumber.rst b/doc/dev/modules-renumber.rst
new file mode 120000
index 00000000..c413055e
--- /dev/null
+++ b/doc/dev/modules-renumber.rst
@@ -0,0 +1 @@
+../../modules/renumber/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-rfc7706.rst b/doc/dev/modules-rfc7706.rst
new file mode 120000
index 00000000..27a0c707
--- /dev/null
+++ b/doc/dev/modules-rfc7706.rst
@@ -0,0 +1 @@
+../../modules/rfc7706.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-serve_stale.rst b/doc/dev/modules-serve_stale.rst
new file mode 120000
index 00000000..6a37d0db
--- /dev/null
+++ b/doc/dev/modules-serve_stale.rst
@@ -0,0 +1 @@
+../../modules/serve_stale/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-stats.rst b/doc/dev/modules-stats.rst
new file mode 120000
index 00000000..b65f2952
--- /dev/null
+++ b/doc/dev/modules-stats.rst
@@ -0,0 +1 @@
+../../modules/stats/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-ta_sentinel.rst b/doc/dev/modules-ta_sentinel.rst
new file mode 120000
index 00000000..ab255d75
--- /dev/null
+++ b/doc/dev/modules-ta_sentinel.rst
@@ -0,0 +1 @@
+../../modules/ta_sentinel/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-ta_signal_query.rst b/doc/dev/modules-ta_signal_query.rst
new file mode 120000
index 00000000..e0d6929a
--- /dev/null
+++ b/doc/dev/modules-ta_signal_query.rst
@@ -0,0 +1 @@
+../../modules/ta_signal_query/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-view.rst b/doc/dev/modules-view.rst
new file mode 120000
index 00000000..048f4146
--- /dev/null
+++ b/doc/dev/modules-view.rst
@@ -0,0 +1 @@
+../../modules/view/README.rst
+\ No newline at end of file
diff --git a/doc/dev/modules-watchdog.rst b/doc/dev/modules-watchdog.rst
new file mode 120000
index 00000000..648513a4
--- /dev/null
+++ b/doc/dev/modules-watchdog.rst
@@ -0,0 +1 @@
+../../modules/watchdog/README.rst
+\ No newline at end of file
diff --git a/doc/modules_api.rst b/doc/dev/modules_api.rst
index 05f7407f..ea23a3e2 100644
--- a/doc/modules_api.rst
+++ b/doc/dev/modules_api.rst
@@ -2,5 +2,5 @@
 
 .. _modules:
 
-.. include:: ../modules/README.rst
+.. include:: ../../modules/README.rst
 
diff --git a/doc/dev/rename_ln.sh b/doc/dev/rename_ln.sh
new file mode 100644
index 00000000..4dd26469
--- /dev/null
+++ b/doc/dev/rename_ln.sh
@@ -0,0 +1,9 @@
+
+for name in $(find . -type l -name "modules-*"); do
+    tgt=`readlink "$name"`
+    ln -f -s ../$tgt $name
+done
+
+
+
+
diff --git a/doc/server_terminology.fodg b/doc/dev/server_terminology.fodg
index 8fecf020..8fecf020 100644
--- a/doc/server_terminology.fodg
+++ b/doc/dev/server_terminology.fodg
diff --git a/doc/dev/systemd-multiinst.rst b/doc/dev/systemd-multiinst.rst
new file mode 120000
index 00000000..7a6a86a4
--- /dev/null
+++ b/doc/dev/systemd-multiinst.rst
@@ -0,0 +1 @@
+../../systemd/multiinst.rst
+\ No newline at end of file
diff --git a/doc/worker_api.rst b/doc/dev/worker_api.rst
index ea971f41..ea971f41 100644
--- a/doc/worker_api.rst
+++ b/doc/dev/worker_api.rst
diff --git a/doc/internal-lua-config.rst b/doc/internal-lua-config.rst
deleted file mode 100644
index 95d79c17..00000000
--- a/doc/internal-lua-config.rst
+++ /dev/null
@@ -1,18 +0,0 @@
-.. SPDX-License-Identifier: GPL-3.0-or-later
-
-.. _internal-lua-config:
-
-**************************
-Internal Lua configuration
-**************************
-
-.. toctree::
-   :maxdepth: 2
-
-   config-lua-overview
-   config-lua-network
-   config-lua-performance
-   config-lua-policy
-   config-lua-logging-monitoring
-   config-lua-dnssec
-   config-lua-experimental
diff --git a/doc/modules-bogus_log.rst b/doc/modules-bogus_log.rst
deleted file mode 120000
index 61ead500..00000000
--- a/doc/modules-bogus_log.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/bogus_log/README.rst
-\ No newline at end of file
diff --git a/doc/modules-daf.rst b/doc/modules-daf.rst
deleted file mode 120000
index 7715ed64..00000000
--- a/doc/modules-daf.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/daf/README.rst
-\ No newline at end of file
diff --git a/doc/modules-detect_time_jump.rst b/doc/modules-detect_time_jump.rst
deleted file mode 120000
index 28214822..00000000
--- a/doc/modules-detect_time_jump.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/detect_time_jump/README.rst
-\ No newline at end of file
diff --git a/doc/modules-detect_time_skew.rst b/doc/modules-detect_time_skew.rst
deleted file mode 120000
index f0c0d149..00000000
--- a/doc/modules-detect_time_skew.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/detect_time_skew/README.rst
-\ No newline at end of file
diff --git a/doc/modules-dns64.rst b/doc/modules-dns64.rst
deleted file mode 120000
index 792753a7..00000000
--- a/doc/modules-dns64.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/dns64/README.rst
-\ No newline at end of file
diff --git a/doc/modules-dnstap.rst b/doc/modules-dnstap.rst
deleted file mode 120000
index f77d78ec..00000000
--- a/doc/modules-dnstap.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/dnstap/README.rst
-\ No newline at end of file
diff --git a/doc/modules-edns_keepalive.rst b/doc/modules-edns_keepalive.rst
deleted file mode 120000
index ec7a3589..00000000
--- a/doc/modules-edns_keepalive.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/edns_keepalive/README.rst
-\ No newline at end of file
diff --git a/doc/modules-experimental_dot_auth.rst b/doc/modules-experimental_dot_auth.rst
deleted file mode 120000
index c5bbfdc5..00000000
--- a/doc/modules-experimental_dot_auth.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/experimental_dot_auth/README.rst
-\ No newline at end of file
diff --git a/doc/modules-hints.rst b/doc/modules-hints.rst
deleted file mode 120000
index 16063101..00000000
--- a/doc/modules-hints.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/hints/README.rst
-\ No newline at end of file
diff --git a/doc/modules-http-custom-services.rst b/doc/modules-http-custom-services.rst
deleted file mode 120000
index 5cbc7ec1..00000000
--- a/doc/modules-http-custom-services.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/http/custom_services.rst
-\ No newline at end of file
diff --git a/doc/modules-http-trace.rst b/doc/modules-http-trace.rst
deleted file mode 120000
index c11fca0e..00000000
--- a/doc/modules-http-trace.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/http/trace.rst
-\ No newline at end of file
diff --git a/doc/modules-http.rst b/doc/modules-http.rst
deleted file mode 120000
index 3fc5fec3..00000000
--- a/doc/modules-http.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/http/README.rst
-\ No newline at end of file
diff --git a/doc/modules-nsid.rst b/doc/modules-nsid.rst
deleted file mode 120000
index 7ea4cc77..00000000
--- a/doc/modules-nsid.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/nsid/README.rst
-\ No newline at end of file
diff --git a/doc/modules-policy.rst b/doc/modules-policy.rst
deleted file mode 120000
index 690a2b5d..00000000
--- a/doc/modules-policy.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/policy/README.rst
-\ No newline at end of file
diff --git a/doc/modules-predict.rst b/doc/modules-predict.rst
deleted file mode 120000
index a4a8424a..00000000
--- a/doc/modules-predict.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/predict/README.rst
-\ No newline at end of file
diff --git a/doc/modules-prefill.rst b/doc/modules-prefill.rst
deleted file mode 120000
index cfa8384a..00000000
--- a/doc/modules-prefill.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/prefill/README.rst
-\ No newline at end of file
diff --git a/doc/modules-priming.rst b/doc/modules-priming.rst
deleted file mode 120000
index a36c3bfc..00000000
--- a/doc/modules-priming.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/priming/README.rst
-\ No newline at end of file
diff --git a/doc/modules-rebinding.rst b/doc/modules-rebinding.rst
deleted file mode 120000
index a8e9d016..00000000
--- a/doc/modules-rebinding.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/rebinding/README.rst
-\ No newline at end of file
diff --git a/doc/modules-refuse_nord.rst b/doc/modules-refuse_nord.rst
deleted file mode 120000
index 22e585cf..00000000
--- a/doc/modules-refuse_nord.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/refuse_nord/README.rst
-\ No newline at end of file
diff --git a/doc/modules-renumber.rst b/doc/modules-renumber.rst
deleted file mode 120000
index 1764c78a..00000000
--- a/doc/modules-renumber.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/renumber/README.rst
-\ No newline at end of file
diff --git a/doc/modules-rfc7706.rst b/doc/modules-rfc7706.rst
deleted file mode 120000
index 11b5c3d8..00000000
--- a/doc/modules-rfc7706.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/rfc7706.rst
-\ No newline at end of file
diff --git a/doc/modules-serve_stale.rst b/doc/modules-serve_stale.rst
deleted file mode 120000
index 98fa5318..00000000
--- a/doc/modules-serve_stale.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/serve_stale/README.rst
-\ No newline at end of file
diff --git a/doc/modules-stats.rst b/doc/modules-stats.rst
deleted file mode 120000
index c8c5583e..00000000
--- a/doc/modules-stats.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/stats/README.rst
-\ No newline at end of file
diff --git a/doc/modules-ta_sentinel.rst b/doc/modules-ta_sentinel.rst
deleted file mode 120000
index 669e5a4e..00000000
--- a/doc/modules-ta_sentinel.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/ta_sentinel/README.rst
-\ No newline at end of file
diff --git a/doc/modules-ta_signal_query.rst b/doc/modules-ta_signal_query.rst
deleted file mode 120000
index 15e5d67f..00000000
--- a/doc/modules-ta_signal_query.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/ta_signal_query/README.rst
-\ No newline at end of file
diff --git a/doc/modules-view.rst b/doc/modules-view.rst
deleted file mode 120000
index da228331..00000000
--- a/doc/modules-view.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/view/README.rst
-\ No newline at end of file
diff --git a/doc/modules-watchdog.rst b/doc/modules-watchdog.rst
deleted file mode 120000
index ac7d5477..00000000
--- a/doc/modules-watchdog.rst
+++ /dev/null
@@ -1 +0,0 @@
-../modules/watchdog/README.rst
-\ No newline at end of file
diff --git a/doc/systemd-multiinst.rst b/doc/systemd-multiinst.rst
deleted file mode 120000
index 2f532708..00000000
--- a/doc/systemd-multiinst.rst
+++ /dev/null
@@ -1 +0,0 @@
-../systemd/multiinst.rst
-\ No newline at end of file
diff --git a/doc/upgrading.rst b/doc/upgrading.rst
deleted file mode 100644
index b41dd7a5..00000000
--- a/doc/upgrading.rst
+++ /dev/null
@@ -1,338 +0,0 @@
-.. SPDX-License-Identifier: GPL-3.0-or-later
-
-.. _upgrading:
-
-*********
-Upgrading
-*********
-
-This section summarizes steps required when upgrading to newer Knot Resolver versions.
-We advise users to also read :ref:`release_notes` for respective versions.
-Section *Module changes* is relevant only for users who develop or use third-party modules.
-
-
-Upcoming changes
-================
-
-Following section provides information about selected changes in not-yet-released versions.
-We advise users to prepare for these changes sooner rather than later to make it easier to upgrade to
-newer versions when they are released.
-
-* Command line option ``--forks`` (``-f``) `is deprecated and will be eventually removed
-  <https://gitlab.nic.cz/knot/knot-resolver/-/issues/631>`_.
-  Preferred way to manage :ref:`systemd-multiple-instances` is to use a process manager,
-  e.g. systemd_ or supervisord_.
-* Function :func:`verbose` is deprecated and will be eventually removed.
-  Prefered way to change logging level is use to :func:`log_level`.
-
-.. _`systemd`: https://systemd.io/
-.. _`supervisord`: http://supervisord.org/
-
-
-5.x to 6.x
-==========
-
-* see the more detailed guide for :ref:`upgrading to version 6.x <upgrading-to-6>`
-
-
-5.4 to 5.5
-==========
-
-Packagers & Developers
-----------------------
-
-* Knot DNS >= 3.0.2 is required.
-
-Module API changes
-------------------
-* Function `cache.zone_import` was removed;
-  you can use `ffi.C.zi_zone_import` instead (different API).
-* When using :ref:`proxyv2`, the meaning of ``qsource.flags`` and ``qsource.comm_flags``
-  in :c:member:`kr_request` changes so that ``flags`` describes the original client
-  communicating with the proxy, while ``comm_flags`` describes the proxy communicating
-  with the resolver. When there is no proxy, ``flags`` and ``comm_flags`` are the same.
-
-
-5.3 to 5.4
-==========
-
-Configuration file
-------------------
-
-* ``kind='doh'`` in :func:`net.listen` was renamed to ``kind='doh_legacy'``. It is recommended to switch to the new DoH implementation with ``kind='doh2'``.
-* :func:`verbose` has been deprecated. In case you want to change logging level,
-  there is new function :func:`log_level`.
-
-Packagers & Developers
-----------------------
-
-* meson option ``verbose_log`` was removed.
-
-Module changes
---------------
-
-* lua function ``warn()`` was removed, use ``log_warn()`` instead. The new function takes a log group number as the first argument.
-* C functions ``kr_log_req()`` and ``kr_log_q()`` were replaced by ``kr_log_req1()`` and ``kr_log_q1()`` respectively. The new function have slightly different API.
-
-
-5.2 to 5.3
-==========
-
-Configuration file
-------------------
-
-* Module ``dnstap``: option ``log_responses`` has been moved inside a new ``client`` section. Refer to the configuration example in :ref:`mod-dnstap`.
-
-Packagers & Developers
-----------------------
-
-* Knot DNS >= 2.9 is required.
-
-5.1 to 5.2
-==========
-
-Users
------
-
-* DoH over HTTP/1 and unencrypted transports is still available in
-  :ref:`legacy http module <mod-http-doh>` (``kind='doh'``).
-  This module will not receive receive any more bugfixes and will be eventually removed.
-* Users of :ref:`control-sockets` API need to terminate each command sent to resolver with newline
-  character (ASCII ``\n``). Correct usage: ``cache.stats()\n``.
-  Newline terminated commands are accepted by all resolver versions >= 1.0.0.
-* `DNS Flag Day 2020 <https://www.dnsflagday.net/2020/>`_ is now effective and Knot Resolver uses
-  maximum size of UDP answer to 1232 bytes. Please double-check your firewall,
-  it has to allow DNS traffic on UDP and **also TCP** port 53.
-* Human readable output in interactive mode and from :ref:`control-sockets` was improved and
-  as consequence slightly changed its format. Users who need machine readable output for scripts
-  should use Lua function ``tojson()`` to convert Lua values into standard JSON format instead
-  of attempting to parse the human readable output.
-  For example API call ``tojson(cache.stats())\n`` will return JSON string with ``cache.stats()``
-  results represented as dictionary.
-  Function ``tojson()`` is available in all resolver versions >= 1.0.0.
-
-Configuration file
-------------------
-
-* Statistics exporter :ref:`mod-graphite` now uses default prefix which combines
-  :func:`hostname()` and :envvar:`worker.id` instead of bare :func:`hostname()`.
-  This prevents :ref:`systemd-multiple-instances` from sending
-  conflicting statistics to server. In case you want to continue in previous time series you
-  can manually set the old values using option ``prefix``
-  in :ref:`Graphite configuration <mod-graphite>`.
-  Beware that non-default values require careful
-  :ref:`instance-specific-configuration` to avoid conflicting names.
-* Lua variable :envvar:`worker.id` is now a string with either Systemd instance name or PID
-  (instead of number). If your custom configuration uses :envvar:`worker.id` value please
-  check your scripts.
-
-Module changes
---------------
-* Reply packet :c:type:`kr_request.answer`
-  `is not allocated <https://gitlab.nic.cz/knot/knot-resolver/-/merge_requests/985>`_
-  immediately when the request comes.
-  See the new :c:func:`kr_request_ensure_answer` function,
-  wrapped for lua as ``req:ensure_answer()``.
-
-
-5.0 to 5.1
-==========
-
-Module changes
---------------
-
-* Modules which use :c:type:`kr_request.trace_log` handler need update to modified handler API. Example migration is `modules/watchdog/watchdog.lua <https://gitlab.nic.cz/knot/knot-resolver/-/merge_requests/957/diffs#6831501329bbf9e494048fe269c6b02944fc227c>`_.
-* Modules which were using logger :c:func:`kr_log_qverbose_impl` need migration to new logger :c:func:`kr_log_q`. Example migration is `modules/rebinding/rebinding.lua <https://gitlab.nic.cz/knot/knot-resolver/-/merge_requests/957/diffs#6c74dcae147221ca64286a3ed028057adb6813b9>`_.
-* Modules which were using :c:func:`kr_ranked_rrarray_add` should note that on success it no longer returns exclusively zero but index into the array (non-negative).  Error states are unchanged (negative).
-
-
-4.x to 5.x
-==========
-
-Users
------
-
-* Control socket location has changed
-
-  .. csv-table::
-     :header: "","4.x location","5.x location"
-
-     "with systemd","``/run/knot-resolver/control@$ID``","``/run/knot-resolver/control/$ID``"
-     "without systemd","``$PWD/tty/$PID``","``$PWD/control/$PID``"
-
-* ``-f`` / ``--forks`` command-line option is deprecated.
-  In case you just want to trigger non-interactive mode, there's new ``-n`` / ``--noninteractive``.
-  This forking style `was not ergonomic <https://gitlab.nic.cz/knot/knot-resolver/issues/529>`_;
-  with independent kresd processes you can better utilize a process manager (e.g. systemd).
-
-
-Configuration file
-------------------
-
-* Network interface are now configured in ``kresd.conf`` with
-  :func:`net.listen` instead of systemd sockets (`#485
-  <https://gitlab.nic.cz/knot/knot-resolver/issues/485>`_). See
-  the following examples.
-
-  .. tip:: You can find suggested network interface settings based on your
-     previous systemd socket configuration in
-     ``/var/lib/knot-resolver/.upgrade-4-to-5/kresd.conf.net`` which is created
-     during the package update to version 5.x.
-
-  .. csv-table::
-     :header: "4.x - systemd socket file", "5.x - kresd.conf"
-
-      "kresd.socket
-      | [Socket]
-      | ListenDatagram=127.0.0.1:53
-      | ListenStream=127.0.0.1:53","| ``net.listen('127.0.0.1', 53, { kind = 'dns' })``"
-      "kresd.socket
-      | [Socket]
-      | FreeBind=true
-      | BindIPv6Only=both
-      | ListenDatagram=[::1]:53
-      | ListenStream=[::1]:53
-      "," | ``net.listen('127.0.0.1', 53, { kind = 'dns', freebind = true })``
-      | ``net.listen('::1', 53, { kind = 'dns', freebind = true })``"
-      "kresd-tls.socket
-      | [Socket]
-      | ListenStream=127.0.0.1:853","| ``net.listen('127.0.0.1', 853, { kind = 'tls' })``"
-      "kresd-doh.socket
-      | [Socket]
-      | ListenStream=127.0.0.1:443","| ``net.listen('127.0.0.1', 443, { kind = 'doh' })``"
-      "kresd-webmgmt.socket
-      | [Socket]
-      | ListenStream=127.0.0.1:8453","| ``net.listen('127.0.0.1', 8453, { kind = 'webmgmt' })``"
-
-* :func:`net.listen` throws an error if it fails to bind. Use ``freebind=true`` option
-  to bind to nonlocal addresses.
-
-
-4.2.2 to 4.3+
-=============
-
-Module changes
---------------
-
-* In case you wrote your own module which directly calls function
-  ``kr_ranked_rrarray_add()``, you need to additionally call function
-  ``kr_ranked_rrarray_finalize()`` after each batch (before changing
-  the added memory regions). For a specific example see `changes in dns64 module
-  <https://gitlab.nic.cz/knot/knot-resolver/commit/edb8ffef7fbe48befeb3f7164d38079dd0be3302#1fe36e8ac0729b279645f7237b7122b1c457a982>`_.
-
-.. _upgrade-from-3-to-4:
-
-4.x to 4.2.1+
-=============
-
-Users
------
-
-* If you have previously installed ``knot-resolver-dbgsym`` package on Debian,
-  please remove it and install ``knot-resolver-dbg`` instead.
-
-3.x to 4.x
-==========
-
-Users
------
-
-* DNSSEC validation is now turned on by default. If you need to disable it, see
-  :ref:`dnssec-config`.
-* ``-k/--keyfile`` and ``-K/--keyfile-ro`` daemon options were removed. If needed,
-  use ``trust_anchors.add_file()`` in configuration file instead.
-* Configuration for :ref:`HTTP module <mod-http>` changed significantly as result of
-  adding :ref:`mod-http-doh` support. Please see examples below.
-* In case you are using your own custom modules, move them to the new module
-  location. The exact location depends on your distribution. Generally, modules previously
-  in ``/usr/lib/kdns_modules`` should be moved to ``/usr/lib/knot-resolver/kres_modules``.
-
-Configuration file
-~~~~~~~~~~~~~~~~~~
-
-* ``trust_anchors.file``, ``trust_anchors.config()`` and ``trust_anchors.negative``
-  aliases were removed to avoid duplicity and confusion. Migration table:
-
-  .. csv-table::
-     :header: "3.x configuration", "4.x configuration"
-
-     "``trust_anchors.file = path``", "``trust_anchors.add_file(path)``"
-     "``trust_anchors.config(path, readonly)``", "``trust_anchors.add_file(path, readonly)``"
-     "``trust_anchors.negative = nta_set``", "``trust_anchors.set_insecure(nta_set)``"
-
-* ``trust_anchors.keyfile_default`` is no longer accessible and is can be set
-  only at compile time. To turn off DNSSEC, use :func:`trust_anchors.remove()`.
-
-  .. csv-table::
-     :header: "3.x configuration", "4.x configuration"
-
-     "``trust_anchors.keyfile_default = nil``", "``trust_anchors.remove('.')``"
-
-* Network for HTTP endpoints is now configured using same mechanism as for normal DNS endpoints,
-  please refer to chapter :ref:`config-lua-network`. Migration table:
-
-  .. csv-table::
-     :header: "3.x configuration", "4.x configuration"
-
-     "``modules = { http = { host = '192.0.2.1', port = 443 }}``","see chapter :ref:`config-lua-network`"
-     "``http.config({ host = '192.0.2.1', port = 443 })``","see chapter :ref:`config-lua-network`"
-     "``modules = { http = { endpoints = ... }}``","see chapter :ref:`mod-http-custom-endpoint`"
-     "``http.config({ endpoints = ... })``","see chapter :ref:`mod-http-custom-endpoint`"
-
-Packagers & Developers
-----------------------
-
-* Knot DNS >= 2.8 is required.
-* meson >= 0.46 and ninja is required.
-* meson build system is now used for compiling the project. For instructions, see
-  the :ref:`build`. Packagers should pay attention to section :ref:`packaging`
-  for information about systemd unit files and trust anchors.
-* Embedding LMDB is no longer supported, lmdb is now required as an external dependency.
-* Trust anchors file from upstream is installed and used as default unless you
-  override ``keyfile_default`` during build.
-
-Module changes
-~~~~~~~~~~~~~~
-
-* Default module location has changed from ``{libdir}/kdns_modules`` to
-  ``{libdir}/knot-resolver/kres_modules``. Modules are now in the lua namespace
-  ``kres_modules.*``.
-* ``kr_straddr_split()`` API has changed.
-
-* C modules defining ``*_layer`` or ``*_props`` symbols need to use a different style, but it's typically a trivial change.
-  Instead of exporting the corresponding symbols, the module should assign pointers to its static structures inside its ``*_init()`` function.  Example migration:
-  `bogus_log module <https://gitlab.nic.cz/knot/knot-resolver/commit/2875a3970#9fa69cdc6ee1903dc22e3262f58996395acab364>`_.
-
-.. _upgrade-from-2-to-3:
-
-2.x to 3.x
-==========
-
-Users
------
-
-* Module :ref:`mod-hints` has option :func:`hints.use_nodata` enabled by default,
-  which is what most users expect. Add ``hints.use_nodata(false)`` to your config
-  to revert to the old behavior.
-* Modules ``cookie`` and ``version`` were removed.
-  Please remove relevant configuration lines with ``modules.load()`` and ``modules =``
-  from configuration file.
-* Valid configuration must open cache using ``cache.open()`` or ``cache.size =``
-  before executing cache operations like ``cache.clear()``.
-  (Older versions were silently ignoring such cache operations.)
-
-Packagers & Developers
-----------------------
-
-* Knot DNS >= 2.7.2 is required.
-
-Module changes
-~~~~~~~~~~~~~~
-
-* API for Lua modules was refactored, please see :ref:`significant-lua-changes`.
-* New layer was added: ``answer_finalize``.
-* ``kr_request`` keeps ``::qsource.packet`` beyond the ``begin`` layer.
-* ``kr_request::qsource.tcp`` renamed to ``::qsource.flags.tcp``.
-* ``kr_request::has_tls`` renamed to ``::qsource.flags.tls``.
-* ``kr_zonecut_add()``, ``kr_zonecut_del()`` and ``kr_nsrep_sort()`` changed
-  parameters slightly.
diff --git a/doc/NEWS.rst b/doc/user/NEWS.rst
index 3c84052a..8a93bc77 100644
--- a/doc/NEWS.rst
+++ b/doc/user/NEWS.rst
@@ -32,5 +32,5 @@ Patch version
 
 This definition is not applicable to versions older than 5.2.0.
 
-.. include:: ../NEWS
+.. include:: ../../NEWS
     :end-before: 5.x branch longterm support
diff --git a/doc/user/conf.py b/doc/user/conf.py
new file mode 100644
index 00000000..fb2bd287
--- /dev/null
+++ b/doc/user/conf.py
@@ -0,0 +1,62 @@
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+import os
+import re
+
+import sphinx_rtd_theme
+
+# -- General configuration -----------------------------------------------------
+
+# General information about the project.
+project = u'Knot Resolver'
+copyright = u'CZ.NIC labs'
+with open('../../meson.build') as f:
+    for line in f:
+        match = re.match(r"\s*version\s*:\s*'([^']+)'.*", line)
+        if match is not None:
+            version = match.groups()[0]
+release = version
+
+# Add any Sphinx extension module names here, as strings.
+extensions = [
+    'sphinx.ext.todo',
+    'sphinx.ext.viewcode',
+    'sphinx_tabs.tabs',
+]
+
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+exclude_patterns = ['_build']
+
+# The name of the Pygments (syntax highlighting) style to use.
+pygments_style = 'friendly'
+
+# -- Options for HTML output ---------------------------------------------------
+
+# Add any paths that contain custom static files (such as style sheets) here,
+# relative to this directory. They are copied after the builtin static files,
+# so a file named "default.css" will overwrite the builtin "default.css".
+html_static_path = ['../_static']
+
+# Theme
+html_theme = 'sphinx_rtd_theme'
+html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]
+
+html_theme_options = {
+    'logo_only': True,  # if we have a html_logo below, this shows only the logo with no title text
+    # ToC options
+    'collapse_navigation': False,
+    'sticky_navigation': True,
+}
+html_logo = '../_static/logo-negativ.svg'
+html_css_files = [
+    'css/custom.css',
+    'css/user.css',
+]
+
+# reStructuredText that will be included at the beginning of every source file that is read.
+# This is a possible place to add substitutions that should be available in every file.
+rst_prolog = """
+.. |yaml| replace:: YAML
+.. |lua| replace:: Lua
+"""
diff --git a/doc/config-cache-predict.rst b/doc/user/config-cache-predict.rst
index f25f95ba..f25f95ba 100644
--- a/doc/config-cache-predict.rst
+++ b/doc/user/config-cache-predict.rst
diff --git a/doc/config-cache-prefill.rst b/doc/user/config-cache-prefill.rst
index b0a24578..b0a24578 100644
--- a/doc/config-cache-prefill.rst
+++ b/doc/user/config-cache-prefill.rst
diff --git a/doc/config-cache.rst b/doc/user/config-cache.rst
index 2a0273ff..66de7da4 100644
--- a/doc/config-cache.rst
+++ b/doc/user/config-cache.rst
@@ -223,4 +223,3 @@ Note that the maximum size cannot be lowered, only increased due to how cache is
 
    Time interval for which a nameserver address will be ignored after determining that it doesn't return (useful) answers.
    The intention is to avoid waiting if there's little hope; instead, kresd can immediately SERVFAIL or immediately use stale records (with :ref:`serve-stale <config-serve-stale>`).
-
diff --git a/doc/config-dns64.rst b/doc/user/config-dns64.rst
index d0c89b28..85c4605e 100644
--- a/doc/config-dns64.rst
+++ b/doc/user/config-dns64.rst
@@ -54,7 +54,7 @@ If they appear, they will be replaced by AAAAs generated from As.
 
     # You could even pass '::/0' to always force using generated AAAAs.
 
-In case you don't want DNS64 for all clients, you can set ``dns64`` option to ``false`` via the :ref:`views <mod-view>` section.
+In case you don't want DNS64 for all clients, you can set ``dns64`` option to ``false`` via the :ref:`views <config-views>` section.
 
 .. code-block:: yaml
 
diff --git a/doc/config-dnssec-ta.rst b/doc/user/config-dnssec.rst
index b02e2ca7..d22ee4f2 100644
--- a/doc/config-dnssec-ta.rst
+++ b/doc/user/config-dnssec.rst
@@ -1,5 +1,14 @@
 .. SPDX-License-Identifier: GPL-3.0-or-later
 
+.. _config-dnssec:
+
+*************************
+DNSSEC, data verification
+*************************
+
+Good news! Knot Resolver uses secure configuration by default, and this configuration
+should not be changed unless absolutely necessary, so feel free to skip over this section.
+
 .. warning::
 
    Options in this section are intended only for expert users and normally should not be needed.
@@ -104,4 +113,31 @@ Following :option:`dnssec <dnssec: false|<options>>` section allow to modify DNS
            trust-anchors:
              - ". 3600 IN DS 19036 8 2 49AAC11..."
 
+DNSSEC is main technology to protect data, but it is also possible to change how strictly
+resolver checks data from insecure DNS zones:
+
+.. option:: options/glue-checking: normal|strict|permissive
+
+   :default: normal
+
+   The resolver strictness checking level.
+
+   By default, resolver runs in *normal* mode. There are possibly many small adjustments
+   hidden behind the mode settings, but the main idea is that in *permissive* mode, the resolver
+   tries to resolve a name with as few lookups as possible, while in *strict* mode it spends much
+   more effort resolving and checking referral path. However, if majority of the traffic is covered
+   by DNSSEC, some of the strict checking actions are counter-productive.
+
+   .. csv-table::
+    :header: "Glue type", "Modes when it is accepted",   "Example glue [#example_glue]_"
+
+    "mandatory glue",     "strict, normal, permissive",  "ns1.example.org"
+    "in-bailiwick glue",  "normal, permissive",          "ns1.example2.org"
+    "any glue records",   "permissive",                  "ns1.example3.net"
+
+   .. [#example_glue] The examples show glue records acceptable from servers
+        authoritative for `org` zone when delegating to `example.org` zone.
+        Unacceptable or missing glue records trigger resolution of names listed
+        in NS records before following respective delegation.
+
 .. _lua-http: https://luarocks.org/modules/daurnimator/http
diff --git a/doc/config-edns-keepalive.rst b/doc/user/config-edns-keepalive.rst
index 7823cc0e..7823cc0e 100644
--- a/doc/config-edns-keepalive.rst
+++ b/doc/user/config-edns-keepalive.rst
diff --git a/doc/config-experimental-dot-auth.rst b/doc/user/config-experimental-dot-auth.rst
index 38b21902..38b21902 100644
--- a/doc/config-experimental-dot-auth.rst
+++ b/doc/user/config-experimental-dot-auth.rst
diff --git a/doc/config-experimental.rst b/doc/user/config-experimental.rst
index 57084a06..57084a06 100644
--- a/doc/config-experimental.rst
+++ b/doc/user/config-experimental.rst
diff --git a/doc/config-forward.rst b/doc/user/config-forward.rst
index 523a3308..051f7119 100644
--- a/doc/config-forward.rst
+++ b/doc/user/config-forward.rst
@@ -5,6 +5,52 @@
 Forwarding
 ==========
 
+*Forwarding* configuration instructs resolver to forward cache-miss queries from clients to manually specified DNS resolvers *(upstream servers)*.
+In other words the *forwarding* mode does exact opposite of the default *recursive* mode because resolver in *recursive* mode automatically selects which servers to ask.
+
+Main use-cases are:
+
+  * Building a tree structure of DNS resolvers to improve performance (by improving cache hit rate).
+  * Accessing domains which are not available using recursion (e.g. if internal company servers return different answers than public ones).
+  * Forwarding through a central DNS traffic filter.
+
+Forwarding implementation in Knot Resolver has following properties:
+
+  * Answers from *upstream* servers are cached.
+  * Answers from *upstream* servers are locally DNSSEC-validated, unless dnssec is disabled.
+  * Resolver automatically selects which IP address from given set of IP addresses will be used (based on performance characteristics).
+  * :ref:`Forwarding <config-forward>` can use either encrypted or unencrypted DNS protocol.
+
+.. warning::
+
+        We strongly discourage use of "fake top-level domains" like ``corp.`` because these made-up domains are indistinguishable from an attack, so DNSSEC validation will prevent such domains from working.
+        If you *really* need a variant of forwarding which does not DNSSEC-validate received data please see chapter :ref:`dns-graft`.
+        In long-term it is better to migrate data into a legitimate, properly delegated domains which do not suffer from these security problems.
+
+.. code-block:: yaml
+
+  forward:
+    # ask everything through some public resolver
+    - subtree: .
+      servers: [ 2001:148f:fffe::1, 193.17.47.1 ]
+
+.. code-block:: yaml
+
+  forward:
+    # encrypted public resolver, again for all names
+    - subtree: .
+      servers:
+        - address: [ 2001:148f:fffe::1, 193.17.47.1 ]
+          transport: tls
+          hostname: odvr.nic.cz
+
+    # use a local authoritative server for an internal-only zone
+    - subtree: internal.example.com
+      servers: [ 10.0.0.53 ]
+      options:
+        authoritative: true
+        dnssec: false
+
 The :option:`forward <forward: <list>>` list of rules overrides which servers get asked to obtain DNS data.
 
 .. option:: forward: <list>
@@ -48,27 +94,3 @@ The :option:`forward <forward: <list>>` list of rules overrides which servers ge
          :default: true
 
          Enable/disable DNSSEC for a subtree.
-
-.. code-block:: yaml
-
-  forward:
-    # ask everything through some public resolver
-    - subtree: .
-      servers: [ 2001:148f:fffe::1, 193.17.47.1 ]
-
-.. code-block:: yaml
-
-  forward:
-    # encrypted public resolver, again for all names
-    - subtree: .
-      servers:
-        - address: [ 2001:148f:fffe::1, 193.17.47.1 ]
-          transport: tls
-          hostname: odvr.nic.cz
-
-    # use a local authoritative server for an internal-only zone
-    - subtree: internal.example.com
-      servers: [ 10.0.0.53 ]
-      options:
-        authoritative: true
-        dnssec: false
diff --git a/doc/config-local-data.rst b/doc/user/config-local-data.rst
index 24293105..24293105 100644
--- a/doc/config-local-data.rst
+++ b/doc/user/config-local-data.rst
diff --git a/doc/config-logging-bogus.rst b/doc/user/config-logging-bogus.rst
index 578767bd..578767bd 100644
--- a/doc/config-logging-bogus.rst
+++ b/doc/user/config-logging-bogus.rst
diff --git a/doc/config-logging-debugging.rst b/doc/user/config-logging-debugging.rst
index 79dd54e4..79dd54e4 100644
--- a/doc/config-logging-debugging.rst
+++ b/doc/user/config-logging-debugging.rst
diff --git a/doc/config-logging-dnstap.rst b/doc/user/config-logging-dnstap.rst
index 1c7ced71..1c7ced71 100644
--- a/doc/config-logging-dnstap.rst
+++ b/doc/user/config-logging-dnstap.rst
diff --git a/doc/config-logging-monitoring.rst b/doc/user/config-logging-monitoring.rst
index 5cc80467..081fac75 100644
--- a/doc/config-logging-monitoring.rst
+++ b/doc/user/config-logging-monitoring.rst
@@ -34,8 +34,8 @@ E.g. on distributions using systemd-journald use command ``journalctl -eu knot-r
 
    .. option:: groups: <list of logging groups>
 
-      Use to turn-on ``debug`` logging for the selected :ref:`groups <config_log_groups>` regardless of the global log level.
-      Other groups are logged to the log based on the initial level.
+      Use to turn-on ``debug`` logging for the selected `groups <./dev/config-logging-header.html>`_
+      regardless of the global log level. Other groups are logged to the log based on the initial level.
 
       .. It is also possible to enable ``debug`` logging level for particular requests,
       .. with :ref:`policies <mod-policy-logging>` or as :ref:`an HTTP service <mod-http-trace>`.
@@ -48,9 +48,12 @@ E.g. on distributions using systemd-journald use command ``journalctl -eu knot-r
       That setting logs directly through systemd's facilities (if available) to preserve more meta-data.
       Do not edit if you do not know what you are doing.
 
-Various statistics for monitoring purposes are available in :ref:`config-monitoring-stats`, including export to central systems like Graphite, Metronome, InfluxDB, or Prometheus format.
+Various statistics for monitoring purposes are available in :ref:`config-monitoring-stats`,
+including export to central systems like Graphite, Metronome, InfluxDB, or Prometheus format.
 
-Additional monitoring and debugging methods are described below. If none of these options fits your deployment or if you have special needs you can configure your own checks and exports using :ref:`async-events`.
+Additional monitoring and debugging methods are described below.
+If none of these options fits your deployment or if you have special
+needs you can configure your own checks and exports using `asynchronous events <./dev/daemon-scripting.html#async-events>`.
 
 .. toctree::
    :maxdepth: 1
diff --git a/doc/config-lua.rst b/doc/user/config-lua.rst
index bc1eeefd..bc1eeefd 100644
--- a/doc/config-lua.rst
+++ b/doc/user/config-lua.rst
diff --git a/doc/config-monitoring-stats.rst b/doc/user/config-monitoring-stats.rst
index f86df94c..43c99870 100644
--- a/doc/config-monitoring-stats.rst
+++ b/doc/user/config-monitoring-stats.rst
@@ -28,7 +28,7 @@ exposed as :ref:`config-monitoring-prometheus`.
       * ``lazy`` - Statistics collection is enabled at the time of request.
       * ``always`` - Statistics collection is always on.
 
-You can see all built-in statistics in :ref:`mod-stats-list` section.
+You can see all built-in statistics in `built-in statistics <./dev/modules-stats.html#mod-stats-list>`_ section.
 
 
 .. _config-monitoring-prometheus:
diff --git a/doc/config-multiple-workers.rst b/doc/user/config-multiple-workers.rst
index b31e9e18..b31e9e18 100644
--- a/doc/config-multiple-workers.rst
+++ b/doc/user/config-multiple-workers.rst
diff --git a/doc/config-network-client.rst b/doc/user/config-network-client.rst
index 1c5eda1e..1c5eda1e 100644
--- a/doc/config-network-client.rst
+++ b/doc/user/config-network-client.rst
diff --git a/doc/config-network-dns-tweaks.rst b/doc/user/config-network-dns-tweaks.rst
index 0e3151ea..0e3151ea 100644
--- a/doc/config-network-dns-tweaks.rst
+++ b/doc/user/config-network-dns-tweaks.rst
diff --git a/doc/config-network-server-tls.rst b/doc/user/config-network-server-tls.rst
index b7461754..b7461754 100644
--- a/doc/config-network-server-tls.rst
+++ b/doc/user/config-network-server-tls.rst
diff --git a/doc/config-network-server.rst b/doc/user/config-network-server.rst
index 7e98dbca..e6db04fe 100644
--- a/doc/config-network-server.rst
+++ b/doc/user/config-network-server.rst
@@ -23,10 +23,10 @@ address + port combination.
    :header: "Protocol/service", :option:`kind <kind: dns|xdp|dot|doh2|doh-legacy>`
 
    "DNS (unencrypted UDP+TCP, :rfc:`1034`)","``dns``"
-   "DNS (unencrypted UDP, :ref:`using XDP Linux API <dns-over-xdp>`)","``xdp``"
+   "DNS (unencrypted UDP, `using XDP Linux API <./dev/daemon-bindings-net_server.html#dns-over-xdp>`_)","``xdp``"
    ":ref:`dns-over-tls`","``dot``"
    ":ref:`dns-over-https`","``doh2``"
-   ":ref:`mod-http-doh`","``doh-legacy``"
+   "`Legacy DNS-over-HTTPS (DoH) <./dev/modules-http.html#mod-http-doh>`_","``doh-legacy``"
 
 .. note::
 
diff --git a/doc/config-network.rst b/doc/user/config-network.rst
index 11d3588b..ccdf613c 100644
--- a/doc/config-network.rst
+++ b/doc/user/config-network.rst
@@ -15,7 +15,7 @@ This picture illustrates different actors involved DNS resolution process,
 supported protocols, and clarifies what we call *server configuration*
 and *client configuration*.
 
-.. image:: server_terminology.svg
+.. image:: ../server_terminology.svg
 
 *Attribution: Icons by Bernar Novalyi from the Noun Project*
 
diff --git a/doc/config-nsid.rst b/doc/user/config-nsid.rst
index 8e9dedf0..237eefb8 100644
--- a/doc/config-nsid.rst
+++ b/doc/user/config-nsid.rst
@@ -9,7 +9,7 @@ Knot Resolver provides server-side support for :rfc:`5001`
 which allows DNS clients to request resolver to send back its NSID
 along with the reply to a DNS request.
 This is useful for debugging larger resolver farms
-(e.g. when using :ref:`systemd-multiple-instances`, anycast or load balancers).
+(e.g. when using multiple instances of Knot Resolver, anycast or load balancers).
 
 NSID value can be configured in the resolver's configuration file:
 
diff --git a/doc/config-overview.rst b/doc/user/config-overview.rst
index 15cb9f62..15cb9f62 100644
--- a/doc/config-overview.rst
+++ b/doc/user/config-overview.rst
diff --git a/doc/config-performance.rst b/doc/user/config-performance.rst
index dbd8d12d..dbd8d12d 100644
--- a/doc/config-performance.rst
+++ b/doc/user/config-performance.rst
diff --git a/doc/config-policy-new.rst b/doc/user/config-policy-new.rst
index e9a3c1b5..e9a3c1b5 100644
--- a/doc/config-policy-new.rst
+++ b/doc/user/config-policy-new.rst
diff --git a/doc/config-priming.rst b/doc/user/config-priming.rst
index 37a3c4a6..37a3c4a6 100644
--- a/doc/config-priming.rst
+++ b/doc/user/config-priming.rst
diff --git a/doc/config-rebinding.rst b/doc/user/config-rebinding.rst
index 5dbe6d23..5dbe6d23 100644
--- a/doc/config-rebinding.rst
+++ b/doc/user/config-rebinding.rst
diff --git a/doc/config-refuse-no-rd.rst b/doc/user/config-refuse-no-rd.rst
index 96d62c00..96d62c00 100644
--- a/doc/config-refuse-no-rd.rst
+++ b/doc/user/config-refuse-no-rd.rst
diff --git a/doc/config-renumber.rst b/doc/user/config-renumber.rst
index 573be247..573be247 100644
--- a/doc/config-renumber.rst
+++ b/doc/user/config-renumber.rst
diff --git a/doc/config-reordering.rst b/doc/user/config-reordering.rst
index 7d126646..7d126646 100644
--- a/doc/config-reordering.rst
+++ b/doc/user/config-reordering.rst
diff --git a/doc/config-rfc7706.rst b/doc/user/config-rfc7706.rst
index ed6fd57f..ed6fd57f 100644
--- a/doc/config-rfc7706.rst
+++ b/doc/user/config-rfc7706.rst
diff --git a/doc/config-serve-stale.rst b/doc/user/config-serve-stale.rst
index 1377e530..1377e530 100644
--- a/doc/config-serve-stale.rst
+++ b/doc/user/config-serve-stale.rst
diff --git a/doc/config-ta-sentinel.rst b/doc/user/config-ta-sentinel.rst
index 096582ae..096582ae 100644
--- a/doc/config-ta-sentinel.rst
+++ b/doc/user/config-ta-sentinel.rst
diff --git a/doc/config-ta-signal-query.rst b/doc/user/config-ta-signal-query.rst
index 6e929840..6e929840 100644
--- a/doc/config-ta-signal-query.rst
+++ b/doc/user/config-ta-signal-query.rst
diff --git a/doc/config-time-jump-detection.rst b/doc/user/config-time-jump-detection.rst
index d1db1f5e..d1db1f5e 100644
--- a/doc/config-time-jump-detection.rst
+++ b/doc/user/config-time-jump-detection.rst
diff --git a/doc/config-time-skew-detection.rst b/doc/user/config-time-skew-detection.rst
index b2a163e8..b2a163e8 100644
--- a/doc/config-time-skew-detection.rst
+++ b/doc/user/config-time-skew-detection.rst
diff --git a/doc/config-views.rst b/doc/user/config-views.rst
index 9781d612..ed73de02 100644
--- a/doc/config-views.rst
+++ b/doc/user/config-views.rst
@@ -48,7 +48,7 @@ Conditions
       This is the only mandatory part of each rule.
       You may use ``[ 0.0.0.0/0, "::/0" ]`` to match all external requests.
 
-   .. option:: dst-subnet <string>
+   .. option:: dst-subnet: <string>
 
       Destination subnet, i.e. restricting the IP address that accepted the query.
 
@@ -58,7 +58,7 @@ Conditions
          the destination address for UDP queries will be just that
          instead of the real address.
 
-   .. option:: protocols <list of strings>
+   .. option:: protocols: <list of strings>
 
       List of protocols for the query; subset of:
       ``udp53``, ``tcp53``, ``dot``, ``doh``, ``doq``.
diff --git a/doc/deployment-advanced-no-manager.rst b/doc/user/deployment-advanced-no-manager.rst
index 31512fe2..31512fe2 100644
--- a/doc/deployment-advanced-no-manager.rst
+++ b/doc/user/deployment-advanced-no-manager.rst
diff --git a/doc/deployment-no-systemd-privileges.rst b/doc/user/deployment-advanced-no-systemd-privileges.rst
index 78e11444..78e11444 100644
--- a/doc/deployment-no-systemd-privileges.rst
+++ b/doc/user/deployment-advanced-no-systemd-privileges.rst
diff --git a/doc/deployment-no-systemd-processes.rst b/doc/user/deployment-advanced-no-systemd-processes.rst
index 362e8546..4800ba96 100644
--- a/doc/deployment-no-systemd-processes.rst
+++ b/doc/user/deployment-advanced-no-systemd-processes.rst
@@ -11,7 +11,7 @@ There following should be taken into consideration when running without systemd:
   processes.
 * Maintenance daemon(s) have to be executed separately.
 * If a process crashes, it might be useful to restart it.
-* Using some mechanism similar to :ref:`mod-watchdog` might be desirable to
+* Using some mechanism similar to `watchdog <./dev/modules-watchdog.html#mod-watchdog>`_ might be desirable to
   recover in case a process becomes unresponsive.
 
 Please note, systemd isn't the only process manager and other solutions exist,
@@ -22,6 +22,6 @@ It is also possible to use kresd without any process management at all, which
 may be suitable for some purposes (such as low-traffic local / home network resolver,
 testing, development or debugging).
 
-.. include:: ../utils/cache_gc/README.rst
+.. include:: ../../utils/cache_gc/README.rst
 
 .. _`supervisord`: http://supervisord.org/
diff --git a/doc/deployment-no-systemd.rst b/doc/user/deployment-advanced-no-systemd.rst
index 68b3464a..c1a585eb 100644
--- a/doc/deployment-no-systemd.rst
+++ b/doc/user/deployment-advanced-no-systemd.rst
@@ -33,7 +33,7 @@ mind when configuring and running kresd without systemd integration.
 .. toctree::
    :maxdepth: 2
 
-   deployment-no-systemd-processes
-   deployment-no-systemd-privileges
+   deployment-advanced-no-systemd-processes
+   deployment-advanced-no-systemd-privileges
 
 .. _`#529`: https://gitlab.nic.cz/knot/knot-resolver/issues/529
diff --git a/doc/deployment-advanced.rst b/doc/user/deployment-advanced.rst
index 8b39b23f..5739b9f6 100644
--- a/doc/deployment-advanced.rst
+++ b/doc/user/deployment-advanced.rst
@@ -6,4 +6,4 @@ Advanced
    :maxdepth: 2
    
    deployment-advanced-no-manager
-   deployment-no-systemd
-\ No newline at end of file
+   deployment-advanced-no-systemd
+\ No newline at end of file
diff --git a/doc/deployment-docker.rst b/doc/user/deployment-docker.rst
index 462ab061..462ab061 100644
--- a/doc/deployment-docker.rst
+++ b/doc/user/deployment-docker.rst
diff --git a/doc/deployment-manual.rst b/doc/user/deployment-manual.rst
index cc8306e5..cc8306e5 100644
--- a/doc/deployment-manual.rst
+++ b/doc/user/deployment-manual.rst
diff --git a/doc/deployment-systemd.rst b/doc/user/deployment-systemd.rst
index b384adf1..fc52e98a 100644
--- a/doc/deployment-systemd.rst
+++ b/doc/user/deployment-systemd.rst
@@ -12,7 +12,7 @@ In the default installation, Knot Resolver contains systemd integration and star
 If you don't have systemd service file for Knot Resolver already installed in your system, you can create one manually with the folling content:
 
 
-.. literalinclude:: ../systemd/knot-resolver.service.in
+.. literalinclude:: ../../systemd/knot-resolver.service.in
     :language: bash
 
 .. note::
diff --git a/doc/deployment-warning.rst b/doc/user/deployment-warning.rst
index 117d388c..117d388c 100644
--- a/doc/deployment-warning.rst
+++ b/doc/user/deployment-warning.rst
diff --git a/doc/user/developer.rst b/doc/user/developer.rst
new file mode 100644
index 00000000..2d8c1faf
--- /dev/null
+++ b/doc/user/developer.rst
@@ -0,0 +1,9 @@
+.. SPDX-License-Identifier: GPL-3.0-or-later
+
+.. _developer:
+
+***********************
+Developer documentation
+***********************
+
+For simplicity of this user documentation, `the developer documentation <./dev/index.html>`_ is separated.
diff --git a/doc/gettingstarted-config.rst b/doc/user/gettingstarted-config.rst
index 5e993d44..bc3aab5a 100644
--- a/doc/gettingstarted-config.rst
+++ b/doc/user/gettingstarted-config.rst
@@ -265,7 +265,7 @@ Knot Resolver's cache contains data its clients queried for.
 If you are concerned about attackers who are able to get access to your
 computer system in power-off state, and your storage device is not secured by
 encryption, you can move the cache to tmpfs_.
-See :ref:`cache_persistence`.
+See :ref:`config-cache-persistence`.
 
 .. .. raw:: html
 
diff --git a/doc/gettingstarted-install.rst b/doc/user/gettingstarted-install.rst
index 7efd4a5f..e7e922dc 100644
--- a/doc/gettingstarted-install.rst
+++ b/doc/user/gettingstarted-install.rst
@@ -42,6 +42,4 @@ Please, follow the instructions for your packaging system:
 
         Hub page: https://hub.docker.com/r/cznic/knot-resolver
 
-
-
-If for some reason you need to install Knot Resolver **from source**, check out :ref:`building from sources <build>` documentation for developers.
+If for some reason you need to install Knot Resolver **from sources**, check out `building from sources <./dev/build.html>`_ in developer documentation.
diff --git a/doc/gettingstarted-startup.rst b/doc/user/gettingstarted-startup.rst
index ea339519..ea339519 100644
--- a/doc/gettingstarted-startup.rst
+++ b/doc/user/gettingstarted-startup.rst
diff --git a/doc/index.rst b/doc/user/index.rst
index 0308bed1..e2706f8c 100644
--- a/doc/index.rst
+++ b/doc/user/index.rst
@@ -56,25 +56,16 @@ If you are a completely new user or new to version 6, please start with chapters
    :name: operators-chapter
    :maxdepth: 1
 
-   upgrading-to-6
    upgrading
+   upgrading-to-6
    NEWS
 
-
 .. toctree::
    :caption: For developers
-   :name: developers-chapter
-   :maxdepth: 2
-
-   manager-dev
-   internal-lua-config
-   architecture
-   build
-   lib
-   modules_api
-   worker_api
-   modules-http-custom-services
+   :name: developer-chapter
+   :maxdepth: 1
 
+   developer
 
 Indices and tables
 ==================
diff --git a/doc/manager-api.rst b/doc/user/manager-api.rst
index 80dcc4af..cc297cc4 100644
--- a/doc/manager-api.rst
+++ b/doc/user/manager-api.rst
@@ -110,4 +110,3 @@ The different HTTP methods perform different modifications of the configuration:
 
 To prevent race conditions when changing configuration from multiple clients simultaneously, every response from the Manager has an ``ETag`` header set. Requests then accept ``If-Match`` and ``If-None-Match`` headers with the latest ``ETag`` value and the corresponding request processing fails with HTTP error code 412 (precondition failed).
 
-
diff --git a/doc/manager-client.rst b/doc/user/manager-client.rst
index c7f90346..c7f90346 100644
--- a/doc/manager-client.rst
+++ b/doc/user/manager-client.rst
diff --git a/doc/upgrading-to-6.rst b/doc/user/upgrading-to-6.rst
index 1028d5b4..9a9db045 100644
--- a/doc/upgrading-to-6.rst
+++ b/doc/user/upgrading-to-6.rst
@@ -49,9 +49,13 @@ The resolver then listens on ``localhost`` with the standard unencrypted DNS pro
 
 To write your own configuration, you can start with the :ref:`getting started chapter for configuration <gettingstarted-config>`.
 
-If you need to rewrite the old Lua configuration to the new declarative one,
-it's a good idea to find the option you want to convert in the :ref:`internal Lua configuration <internal-lua-config>`,
-and the equivalent option will very likely be in the :ref:`new declarative configuration <configuration-chapter>` documentation in a similar place.
+Conversion to |yaml|
+--------------------
+
+Lua configuration is considered internal as of version 6 and can be found in the `developer documentation`_, which is separate from the user documentation.
+
+To switch from your old Lua configuration, it is a good idea to open this `developer documentation`_ and find the Lua option you want to convert.
+Also open the :ref:`new declarative configuration <configuration-chapter>` documentation. The equivalent |yaml| option will very likely in a similar place.
 The documentation structure is basically the same.
 Otherwise, you will have to search for the option in the documentation separately.
 
@@ -99,3 +103,5 @@ validate new config                         ``kresctl validate path/to/new/confi
 look at the Lua config                      ``kresctl convert path/to/new/config.yaml``                                                   ``cat /path/to/config.conf``
 gather metrics                              point Prometheus etc. at the single HTTP API                                                 collect metrics manually from all individual processes
 ==========================================  ===========================================================================================  ==================================================================
+
+.. _`developer documentation`: ./dev/index.html
diff --git a/doc/user/upgrading.rst b/doc/user/upgrading.rst
new file mode 100644
index 00000000..05374f65
--- /dev/null
+++ b/doc/user/upgrading.rst
@@ -0,0 +1,21 @@
+.. SPDX-License-Identifier: GPL-3.0-or-later
+
+.. _upgrading:
+
+*********
+Upgrading
+*********
+
+This section summarizes steps required when upgrading to newer Knot Resolver versions.
+We advise users to also read :ref:`release_notes` for respective versions.
+
+5.x to 6.x
+==========
+
+See the detailed guide for :ref:`upgrading to version 6.x <upgrading-to-6>`.
+
+Older versions
+==============
+
+Information for upgrading older versions of the resolver can be found in the older documentation
+hosted on `knot-resolver.readthedocs.io/ <https://knot-resolver.readthedocs.io/en/latest/upgrading.html>`_.
diff --git a/scripts/make-doc.sh b/scripts/make-doc.sh
index 6cefd6c5..1723ada7 100755
--- a/scripts/make-doc.sh
+++ b/scripts/make-doc.sh
@@ -11,10 +11,15 @@ python3 -m knot_resolver_manager.cli schema > ../doc/_static/config.schema.json
 generate-schema-doc --config expand_buttons=true ../doc/_static/config.schema.json ../doc/_static/schema_doc.html
 popd
 
-pushd doc
+# generating the user documentation
+SPHINX=$(type -P sphinx-build-3 sphinx-build | head -n1)
+rm -rf doc/html
+"$SPHINX" "$@" -b html -d doc/user/.doctrees doc/user doc/html
+
+pushd doc/dev
 doxygen
 popd
 
-SPHINX=$(type -P sphinx-build-3 sphinx-build | head -n1)
-rm -rf doc/html
-"$SPHINX" "$@" -b html -d doc/.doctrees doc doc/html
+# generating the developer documentation
+rm -rf doc/html/dev
+"$SPHINX" "$@" -b html -d doc/dev/.doctrees doc/dev doc/html/dev